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updates: - [github.com/psf/black: 24.4.2 → 24.8.0](psf/black@24.4.2...24.8.0) - [github.com/pycqa/flake8: 7.1.0 → 7.1.1](PyCQA/flake8@7.1.0...7.1.1)
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Fix type errors in exporting history after manually adding peaks
[pre-commit.ci] pre-commit autoupdate
Make sure peak detection works with negative signals
smoia
reviewed
Oct 30, 2024
smoia
reviewed
Oct 30, 2024
| locs, heights = signal.find_peaks(data[:], distance=cdist, height=thresh) | ||
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| # check if data is negative, if so make it all positive and continue with signal | ||
| phys_signal = data.data - data.data.min() if data.data.min() < 0 else data.data |
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I was thinking that maybe we can just always work with data at min=0 for peak detection (it doesn't rescale the data for real). That should make percentages for thresh easier to work with. Thoughts?
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| phys_signal = data.data - data.data.min() if data.data.min() < 0 else data.data | |
| phys_signal = data.data - data.data.min() |
smoia
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Oct 30, 2024
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See the suggestion on min()=0, for the rest all good, thanks!
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Integrate latest peakdet changes in prep4phys
Proposed Changes
Change Type
bugfix(+0.0.1)minor(+0.1.0)major(+1.0.0)refactoring(no version update)test(no version update)infrastructure(no version update)documentation(no version update)otherChecklist before review