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@BioComputingUP BioComputing Group, University of Padova

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    45 repositories

    • OSAI_ecosystem

      Public
      A community-curated list of Open and Sustainable AI (OSAI) ecosystem components mapped to practical recommendations to guide their use for research.
      HTML
      •
      Other
      •0•0•12•9•Updated Jan 10, 2026Jan 10, 2026

    • STRPsearch

      Public
      Python
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Jan 8, 2026Jan 8, 2026

    • ngx-mol-viewers

      Public
      Angular wrapper for Mol* structure viewer, made simple
      HTML
      •
      MIT License
      •0•2•4•0•Updated Dec 21, 2025Dec 21, 2025

    • CAFA-evaluator

      Public
      A Python Tool for Benchmarking Ontological Classification Methods
      Python
      •
      GNU General Public License v3.0
      •20•49•0•1•Updated Dec 6, 2025Dec 6, 2025

    • af2_af3_idr_analysis

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Nov 27, 2025Nov 27, 2025

    • ped5-ui

      Public
      HTML
      •0•0•3•0•Updated Nov 25, 2025Nov 25, 2025

    • commit-tracker-apicuron

      Public
      Action that pushes information to APICURON on commit
      TypeScript
      •
      MIT License
      •1•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • dome-registry

      Public
      TypeScript
      •1•2•11•0•Updated Nov 12, 2025Nov 12, 2025

    • ped-decription-script

      Public
      Python
      •0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • EnsembleTools

      Public
      IDPEnsembleTools is a Python package designed to facilitate the loading, analysis, and comparison of multiple conformational ensembles of intrinsically disordered proteins (IDPs).
      Jupyter Notebook
      •
      MIT License
      •1•5•0•0•Updated Oct 30, 2025Oct 30, 2025

    • apicuron-cmp

      Public
      A Basic Consent Management System for databases using APICURON
      JavaScript
      •0•0•1•0•Updated Oct 30, 2025Oct 30, 2025

    • idpo

      Public
      The Intrinsically Disordered Proteins Ontology, a standardized vocabulary for intrinsically disordered proteins
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •2•5•1•0•Updated Oct 14, 2025Oct 14, 2025

    • ring-pymol

      Public
      This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
      pluginbioinformaticspymol
      Python
      •
      GNU General Public License v3.0
      •5•30•4•0•Updated Sep 17, 2025Sep 17, 2025

    • MobiDB-lite

      Public
      Long disorder consensus predictor
      Python
      •
      GNU General Public License v2.0
      •0•17•2•0•Updated Sep 2, 2025Sep 2, 2025

    • Victor

      Public
      VIrtual Construction TOol for pRotein design
      C++
      •
      Other
      •13•6•0•11•Updated Aug 25, 2025Aug 25, 2025

    • CAID

      Public
      Critical Assessment of Intrinsic Disorder
      Python
      •1•14•0•0•Updated Aug 11, 2025Aug 11, 2025

    • caid2-reference

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

    • caid-reference

      Public
      Critical Assessment of Protein Intrinsic Disorder (CAID) - Reference generation and analysis
      Jupyter Notebook
      •0•1•0•0•Updated Jul 11, 2025Jul 11, 2025

    • BioComputingUP.github.io

      Public
      SCSS
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•2•Updated Jul 7, 2025Jul 7, 2025

    • dome-registry-Data-analysis

      Public
      HTML
      •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • GeomeTRe

      Public
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Jul 1, 2025Jul 1, 2025

    • GeomeTRe_results

      Public
      GeomeTRe calculation results for STRPs from RepeatsDB v4, including large-scale and statistical analyses. Reproducible Jupyter Notebook scripts are available in this repository.
      Jupyter Notebook
      •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • ngx-scroll-to

      Public
      Scroll to any element to enhance scroll-based features in you app. Works for Angular 4+, both AoT and SSR. No dependencies.
      TypeScript
      •
      MIT License
      •80•0•0•0•Updated Jun 23, 2025Jun 23, 2025

    • DRMAAtic

      Public
      DRMAAtic REST APIs for job scheduling @BioCompUP
      CSS
      •0•2•0•0•Updated Apr 14, 2025Apr 14, 2025

    • elastic-slurm-in-openstack

      Public
      Configure an elastic Slurm cluster on OpenStack cloud
      Shell
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • MobiDB-lite_docker

      Public
      Dockerfile
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • apicuron-action

      Public
      TypeScript
      •0•0•0•1•Updated Jan 27, 2025Jan 27, 2025

    • DRMAAtic-lib

      Public
      Python
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • AlphaFold-disorder

      Public
      Predict disorder and disorder binding from AlphaFold structures
      Python
      •
      GNU General Public License v3.0
      •4•18•0•0•Updated Nov 25, 2024Nov 25, 2024

    • FLIPPER

      Public
      Fast Linear Interacting Peptides Predictor
      Python
      •1•4•2•0•Updated Aug 30, 2024Aug 30, 2024