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Dec 5, 2025
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[joss] typos #142

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30 changes: 15 additions & 15 deletions paper/paper.bib
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ @article{lautenberger2013
publisher = {Elsevier BV},
author = {Lautenberger, Chris},
year = {2013},
month = nov,
month = Nov,
pages = {289–298}
}
@techreport{finney1998,
Expand Down Expand Up @@ -74,7 +74,7 @@ @article{kamilaris2023
publisher = {Elsevier BV},
author = {Kamilaris, A. and Filippi, J.B. and Padubidri, C. and Koole, R. and Karatsiolis, S.},
year = {2023},
month = apr,
month = Apr,
pages = {103747}
}

Expand All @@ -90,7 +90,7 @@ @article{linn2005
publisher = {American Geophysical Union (AGU)},
author = {Linn, Rodman R. and Cunningham, Philip},
year = {2005},
month = jul
month = Jul
}
@article{allaire2022,
title = {Simulation-based high-resolution fire danger mapping using deep learning},
Expand All @@ -103,7 +103,7 @@ @article{allaire2022
publisher = {CSIRO Publishing},
author = {Allaire, Frédéric and Filippi, Jean-Baptiste and Mallet, Vivien and Vaysse, Florence},
year = {2022},
month = apr,
month = Apr,
pages = {379–394}
}
@article{allaire2021,
Expand Down Expand Up @@ -144,7 +144,7 @@ @article{filippi2014
publisher = {Copernicus GmbH},
author = {Filippi, Jean-Baptiste and Mallet, Vivien and Nader, Bahaa},
year = {2014},
month = nov,
month = Nov,
pages = {3077–3091}
}

Expand Down Expand Up @@ -176,7 +176,7 @@ @article{filippi2009
publisher = {SAGE Publications},
author = {Filippi, Jean-Baptiste and Morandini, Frédéric and Balbi, Jacques Henri and Hill, David RC},
year = {2009},
month = aug,
month = Aug,
pages = {629–646}
}

Expand All @@ -192,7 +192,7 @@ @article{santoni2011
author = {Santoni, Paul-Antoine and Filippi, Jean-Baptiste and Balbi, Jacques-Henri and Bosseur, Frédéric},
editor = {Morvan, D},
year = {2011},
month = jan
month = Jan
}
@article{balbi2009,
author = {Balbi, Jacques-Henri and Morandini, Frédéric and Silvani, Xavier and Filippi, Jean-Baptiste and Rinieri, Frédéric},
Expand Down Expand Up @@ -223,7 +223,7 @@ @article{garcia2008
publisher = {Wiley},
author = {Garcia, Tanya and Braun, John and Bryce, Robert and Tymstra, Cordy},
year = {2008},
month = feb,
month = Feb,
pages = {836–848}
}
@article{pais2021,
Expand All @@ -249,7 +249,7 @@ @article{mandel2011
publisher = {Copernicus GmbH},
author = {Mandel, J. and Beezley, J. D. and Kochanski, A. K.},
year = {2011},
month = jul,
month = Jul,
pages = {591–610}
}

Expand All @@ -263,7 +263,7 @@ @article{campos2023
publisher = {Elsevier BV},
author = {Campos, Cátia and Couto, Flavio Tiago and Filippi, Jean-Baptiste and Baggio, Roberta and Salgado, Rui},
year = {2023},
month = jul,
month = Jul,
pages = {106776}
}
@article{couto2024,
Expand All @@ -276,7 +276,7 @@ @article{couto2024
publisher = {Elsevier BV},
author = {Couto, Flavio Tiago and Filippi, Jean-Baptiste and Baggio, Roberta and Campos, Cátia and Salgado, Rui},
year = {2024},
month = apr,
month = Apr,
pages = {107223}
}
@article{baggio2022,
Expand All @@ -289,7 +289,7 @@ @article{baggio2022
publisher = {Elsevier BV},
author = {Baggio, Roberta and Filippi, Jean-Baptiste and Truchot, Benjamin and Couto, Flavio T.},
year = {2022},
month = dec,
month = Dec,
pages = {103699}
}
@Article{filippi2021,
Expand Down Expand Up @@ -329,7 +329,7 @@ @article{strada2012
publisher = {Elsevier BV},
author = {Strada, S. and Mari, C. and Filippi, Jean-Baptiste. and Bosseur, F.},
year = {2012},
month = may,
month = May,
pages = {234–249}
}
@article{filippi2018,
Expand All @@ -343,7 +343,7 @@ @article{filippi2018
publisher = {MDPI AG},
author = {Filippi, Jean-Baptiste and Bosseur, Frédéric and Mari, Céline and Lac, Christine},
year = {2018},
month = jun,
month = Jun,
pages = {218}
}
@article{alonsopinar2025,
Expand All @@ -356,6 +356,6 @@ @article{alonsopinar2025
publisher = {Elsevier BV},
author = {Alonso-Pinar, Alberto and Filippi, Jean-Baptiste and Filkov, Alexander},
year = {2025},
month = may,
month = May,
pages = {104348}
}
8 changes: 4 additions & 4 deletions paper/paper.md
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Original file line number Diff line number Diff line change
Expand Up @@ -100,8 +100,8 @@ ForeFire was developed as a community tool to fill the gap between highly comple

## Rapid prototyping of new models
ForeFire implements several standard fire flux and spread rate models, such as Rothermel [@andrews2018] and Balbi [@balbi2009], and makes it trivial to switch, extend, or add to this base with a single `.cpp` file using any existing model file as a template.
Internally, data is handled as *layers* that can come from a NumPy array, be read from NetCDF, or be generated on the fly by ForeFire (e.g., slope derived from the elevation layer, fuel loaded as an index map with tabulated fuel — with standards fuel tables [@Scott2005] already available).
Developing a Rate Of Spread wildfire model was the original purpose of this simulation code and helped to iterate versions of the Balbi Rate Of Spread formulation on case studies [@balbi2009;@santoni2011]. It also served to implement various heat and chemical species flux models used for volcanic eruption [@filippi2021], plume chemistry [@strada2012], or industrial fires [@baggio2022]. In addition, the code includes a generic `ANNPropagationModel` that implements a feedforward artificial neural network (ANN) and expects a pre-trained graph file.
Internally, data is handled as *layers* that can come from a NumPy array, be read from NetCDF, or be generated on the fly by ForeFire (e.g., slope derived from the elevation layer, fuel loaded as an index map with tabulated fuel — with standard fuel tables [@Scott2005] already available).
Developing a Rate Of Spread wildfire model was the original purpose of this simulation code and helped to iterate versions of the Balbi Rate Of Spread formulation on case studies [@balbi2009; @santoni2011]. It also served to implement various heat and chemical species flux models used for volcanic eruption [@filippi2021], plume chemistry [@strada2012], or industrial fires [@baggio2022]. In addition, the code includes a generic `ANNPropagationModel` that implements a feedforward artificial neural network (ANN) and expects a pre-trained graph file.

## Batch simulations with the ForeFire scripting
Custom FF language allows users to easily generate multiple scenarios, including fire-fighting strategies, model evaluation [@filippi2014], ensemble forecasts [@allaire2020], or generate a deep learning database [@allaire2021]. A FF script is a set of scheduled instructions that are interpreted in real-time, advancing the simulation clock with a `step[dt=]` or a `goTo[t=]` command.
Expand All @@ -113,11 +113,11 @@ By utilizing pre-compiled datasets over extensive regions, this approach support


### Two-way coupling with the MesoNH atmospheric model
The same scripts can be executed in coupled mode with the Open-Source atmospheric model [MesoNH](https://mesonh.cnrs.fr/) [@lac2018] with fire propagating using surface fields (wind) from MesoNH and forcing heat and other flux fields into the atmosphere. An idealized coupled simulation can be run on a laptop at field scale [@filippi2013], but also on a supercomputer to forecast fire-induced winds of large wildfires [@filippi2018], fire-induced convection [@couto2024;@campos2023], or even to estimate wildfire spotting [@alonsopinar2025].
The same scripts can be executed in coupled mode with the Open-Source atmospheric model [MesoNH](https://mesonh.cnrs.fr/) [@lac2018] with fire propagating using surface fields (wind) from MesoNH and forcing heat and other flux fields into the atmosphere. An idealized coupled simulation can be run on a laptop at field scale [@filippi2013], but also on a supercomputer to forecast fire-induced winds of large wildfires [@filippi2018], fire-induced convection [@couto2024; @campos2023], or even to estimate wildfire spotting [@alonsopinar2025].

Coupled simulations generate gigabytes of 3D data that can be converted to VTK/VTU files using Python helper scripts to visualize in the open-source tool ParaView, as shown in \autoref{fig:coupled}.

![Coupled simulation of the Pedrogao Grande wildfire [@couto2024] (Paraview rendering). On the ground, the burned area is in orange, while among atmospheric variables, downbursts are highlighted in red and pyro-cumulonimbus clouds in blue.\label{fig:coupled}](coupled.jpg)
![Coupled simulation of the Pedrogao Grande wildfire [@couto2024] (ParaView rendering). On the ground, the burned area is in orange, while among atmospheric variables, downbursts are highlighted in red and pyro-cumulonimbus clouds in blue.\label{fig:coupled}](coupled.jpg)

# Acknowledgements
This work has been supported by the Centre National de la Recherche Scientifique and French National Research Agency under grants **ANR-09-COSI-006-01 (IDEA)** and **ANR-16-CE04-0006 (FIRECASTER)**. The authors thank all contributors and collaborators who have assisted in the development and testing of the ForeFire software.
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