Fix workflow tests that are failing #410
Conversation
…macrocyclic_monomer.sh
…l to res in test_diffusion.py
…chunks to speed up the workflow.
…is a class method so examples run only once
…o not fail before running examples
rclune
left a comment
rclune
left a comment
There was a problem hiding this comment.
Thanks for reformatting so much stuff to make it more readable!
| TestSubmissionCommands.total_chunks = args.total_chunks | ||
| TestSubmissionCommands.chunk_index = args.chunk_index | ||
|
|
||
| unittest.main(argv=[sys.argv[0]] + remaining) |
There was a problem hiding this comment.
@woodsh17 I am assuming that this was simply reformatted with PEP8 settings, - is that so?
There was a problem hiding this comment.
Are you referencing changing unittest.main() to unittest.main(argv=[sys.argv[0]] + remaining)? These arguments were added so we don't pass the custom arguments --total_chunks and --chunk_index to unittest, which would be unrecognized.
| else | ||
| echo "A chunk (PID $pid) passed" | ||
| fi | ||
| done |
There was a problem hiding this comment.
LGTM! I would personally would start to consider moving this logic into Python/shell script that live inside repository so it could be run/tested without the need to trigger the GH action. But for simple cases (like above) current approach is also works. 👍
After running the test, I found that this was needed This reverts commit ead721f.
This PR updates the tests so that all the examples run and if an example fails then the test results in a failure as well. Changes include:
Currently design_ppi_scaffolded, design_timbarrel, and design_ppi_flexible_peptide_with_secondarystructure_specification are failing which should be addressed in other future PRs.