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docs: about a python command pitfall #237

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4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -148,9 +148,11 @@ For this, we just need to specify three things:
3. The number of designs we want

```
./scripts/run_inference.py 'contigmap.contigs=[150-150]' inference.output_prefix=test_outputs/test inference.num_designs=10
python ./scripts/run_inference.py 'contigmap.contigs=[150-150]' inference.output_prefix=test_outputs/test inference.num_designs=10
```

(Use `python3` instead, if you have `python` point to python2.)

Let's look at this in detail.
Firstly, what is `contigmap.contigs`?
Hydra configs tell the inference script how it should be run. To keep things organised, the config has different sub-configs, one of them being `contigmap`, which pertains to everything related to the contig string (that defines the protein being built).
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