Fixes for steered MD tutorial and update to RBFE tutorial#33

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mb2055 wants to merge 9 commits intomainfrom

Commits on Feb 21, 2025

Updates RBFE notebook to support cinnabar 0.4.1
Matthew
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Update README to new cinnabar version
Matthew
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Updates CollectiveVariable.RMSD to new API
Matthew
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Commits on Feb 24, 2025

Updates to be consistent with older versions.
Matthew
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Commits on Oct 3, 2025

Adds link to snakemake workflow to RBFE setup tutorial
Matthew
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Commits on Oct 10, 2025

Updates get_tutorial links to new location, and alters the steered md reference.pdb
Matthew
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Commits on Oct 22, 2025

Post-testing changes, including slight update to node filepaths and updated README
Matthew
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Blacken node running notebook
Matthew
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Update python version in README
Matthew
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