Fix inspector bug, IPF plotting for grains and update papers

defdap/base.py

@@ -950,8 +950,13 @@ def grain_map_data(self, map_data=None, grain_data=None, bg=np.nan):
                 grain_data = self.grain_data(map_data)
         x0, y0, xmax, ymax = self.extreme_coords
 
-        grain_map_data = np.full((ymax - y0 + 1, xmax - x0 + 1), bg,
-                               dtype=type(grain_data[0]))
+        # To support 3D array (ie RGB)
+        map_shape = (ymax - y0 + 1, xmax - x0 + 1)
+        if grain_data.ndim > 1:
+            map_shape = map_shape + grain_data.shape[1:]
+
+        # Create output array with appropriate dtype
+        grain_map_data = np.full(map_shape, bg, dtype=grain_data.dtype)
 
         for coord, data in zip(self.data.point, grain_data):
             grain_map_data[coord[1] - y0, coord[0] - x0] = data

defdap/ebsd.py

@@ -1306,7 +1306,28 @@ def calc_grod(self):
         misori_axis = (2 * dq[1:4] * np.arccos(dq[0])) / np.sqrt(1 - dq[0]**2)
 
         return misori, misori_axis
+
+    def calc_ipf_colour(self, grain_data, direction, bg_colour=None):
 
+        grain_colours = Quat.calc_ipf_colours(
+            grain_data, direction, self.phase.crystal_structure.name
+        ).T
+
+        return grain_colours
+
+    def calc_euler_colour(self, grain_data, bg_colour=None):
+
+        if self.phase.crystal_structure.name == 'cubic':
+            norm = np.array([2 * np.pi, np.pi / 2, np.pi / 2])
+        elif self.phase.crystal_structure.name == 'hexagonal':
+            norm = np.array([np.pi, np.pi, np.pi / 3])
+        else:
+            ValueError("Only hexagonal and cubic symGroup supported")
+
+        grain_colours = grain_data.T / norm
+
+        return grain_colours
+
     def plot_ref_ori(self, direction=np.array([0, 0, 1]), **kwargs):
         """Plot the average grain orientation on an IPF.
 

defdap/inspector.py

@@ -419,8 +419,8 @@ def calc_rdr(self,
             y_list.extend(ymap - self.selected_dic_grain.extreme_coords[1])
 
             # Get u and v values at each coordinate
-            u = self.selected_dic_map.crop(self.selected_dic_map.data.displacement[0])[ymap, xmap]
-            v = self.selected_dic_map.crop(self.selected_dic_map.data.displacement[1])[ymap, xmap]
+            u = self.selected_dic_map.data.displacement[0][ymap, xmap]
+            v = self.selected_dic_map.data.displacement[1][ymap, xmap]
 
             # Subtract mean u and v value for each row
             u_list.extend(u - np.mean(u, axis=1)[:, None])

docs/source/papers.rst

@@ -1,11 +1,22 @@
 Papers
 ========
 
-Here is a list of papers which have used the DefDAP Python library.
+Here is a list of journal papers which have used the DefDAP Python library.
+
+2026
+------
+
+* `A.D.Smith, D.Lunt, M.Taylor, A.Davis, R.Thomas, F.Martinez, A.Candeias, A.Gholinia, M.Preuss, J.M.Donoghue. A new approach to SEM in-situ thermomechanical experiments through automation. Ultramicroscopy. Vol. 280, Feb 2026, pp. 114244. <https://doi.org/10.1016/j.ultramic.2025.114244>`_
 
 2025
 ------
 
+* `B.Yavuzyegit, K.Karali, S.Davis, B.Morrison, S.Karabal, K.Balandiz, N.Smith, S.Usov, P.Shashkov, R.Bonithon, G.Blunn. High-resolution DIC analysis of in situ strain and crack propagation in coated AZ31 magnesium alloys under mechanical loading. Journal of Materials Science. Vol. 60, Aug 2025, pp. 14708–14730. <https://doi.org/10.1007/s10853-025-11243-4>`_
+
+* `Z.Yang, R.Thomas, J.Donoghue, A.Smith, M.Preuss, A.Gholinia. In situ and correlative study of dislocation density and deformation mechanisms in Inconel 690. Materials Characterization. Volume 230, Part A, December 2025, 115699. <https://doi.org/10.1016/j.matchar.2025.115699>`_
+
+* `G.Zhou, D.T.Fullwood, R.H.Wagoner, S.R.Niezgoda, T.Russell, D.Lunt. Slip mode analysis in BCC tantalum with HRDIC. Materials Science and Engineering: A. Volume 947, December 2025, 149179. <https://doi.org/10.1016/j.msea.2025.149179>`_
+
 * `B.Yang, X.Xu, D.Lunt, F.Zhang, M.D.Atkinson, Y.Li, J.LLorca, X.Zhou. Grain size dependence of microscopic strain distribution in a high entropy alloy at the onset of plastic deformation. Acta Materialia. Volume 285, Feb 2025, 120682. <https://doi.org/10.1016/j.actamat.2024.120682>`_
 
 * `D.Hu, A.D.Smith, D.Lunt, R.Thomas, M.D.Atkinson, X.Liu, Ö.Koç, J.M.Donoghue, Z.Zhang, J.Quinta da Fonseca, M.Preuss, Tracking the onset of plasticity in a Ni-base superalloy using in-situ High-Resolution Digital Image Correlation. Materialia. Volume 220, Feb 2025, 114654. <https://doi.org/10.1016/j.matchar.2024.114654>`_