Adds esl-mixdchlet DNA strand symmetry option #81
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This adds a
-doption toesl-mixdchlet fit, which restricts it to mixture Dirichlets that are DNA strand symmetric (for length-4 count vectors with counts of A C G T).In other words, the mixture Dirichlet is unchanged if we swap the identities of A ↔ T and G ↔ C.
This is appropriate for DNA where the choice of "forward" strand is arbitrary (for example, transcriptional enhancers).
So, this may be useful for nhmmer.
I've probably got something wrong with (e.g.) the coding conventions...