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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 377 161

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 26 15

Repositories

Showing 10 of 472 repositories
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 8 MIT 0 0 1 Updated Feb 26, 2026
  • aibs-informatics-core Public

    Core library to be used as foundation across multiple projects

    AllenInstitute/aibs-informatics-core’s past year of commit activity
    Python 2 0 0 1 Updated Feb 27, 2026
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Feb 26, 2026
  • PyPeakRankR Public

    Reproducible and extensible feature extraction for ATAC-seq peak ranking.

    AllenInstitute/PyPeakRankR’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 26, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 274 9 Updated Feb 26, 2026
  • openscope_databook Public

    OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

    AllenInstitute/openscope_databook’s past year of commit activity
    Python 75 27 22 4 Updated Feb 26, 2026
  • mermaid Public

    streamlit implementation of mermaid charts

    AllenInstitute/mermaid’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 26, 2026
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Feb 26, 2026
  • aibs-informatics-cdk-lib Public

    Library for AWS CDK Constructs related to AIBS Informatics Services

    AllenInstitute/aibs-informatics-cdk-lib’s past year of commit activity
    Python 1 0 0 0 Updated Feb 26, 2026
  • aibs-informatics-aws-utils Public

    Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team

    AllenInstitute/aibs-informatics-aws-utils’s past year of commit activity
    Python 1 0 2 0 Updated Feb 26, 2026
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