diff --git a/CHANGELOG.md b/CHANGELOG.md index a471164..b776347 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -63,8 +63,8 @@ detailed information, please refer to the updated API documentation. * New `imcflibs.imagej.bdv` submodule, providing BigDataViewer related functions: * New classes: - * `ProcessingOptions` to store all options on how to process the dataset. - * `DefinitionOptions` to store all options on how to define the dataset. + * `imcflibs.imagej.bdv.ProcessingOptions` to store all options on how to process the dataset. + * `imcflibs.imagej.bdv.DefinitionOptions` to store all options on how to define the dataset. * `imcflibs.imagej.bdv.check_processing_input` to sanitize and clarify the acitt input selection. * `imcflibs.imagej.bdv.get_processing_settings` to generate the strings needed @@ -76,7 +76,7 @@ detailed information, please refer to the updated API documentation. Dataset" using the "Manual Loader" option. * `imcflibs.imagej.bdv.resave_as_h5` to resave the dataset in H5 to make it compatible with BigDataViewer/BigStitcher. - * `imcflibs.imagej.bdv.flip_axes` tocall BigStitcher's "Flip Axes" command. + * `imcflibs.imagej.bdv.flip_axes` to call BigStitcher's "Flip Axes" command. * `imcflibs.imagej.bdv.phase_correlation_pairwise_shifts_calculation` to calculate pairwise shifts using Phase Correlation. * `imcflibs.imagej.bdv.filter_pairwise_shifts` for filtering pairwise shifts @@ -94,7 +94,7 @@ detailed information, please refer to the updated API documentation. * New `imcflibs.imagej.trackmate` submodule to provide helper functions to interface with Trackmate: * Multiple functions to set up Trackmate settings with different detectors, - such as `cellpose`, `StarDist` or a `log detector`. + such as `imcflibs.imagej.trackmate.cellpose_detector`, `imcflibs.imagej.trackmate.stardist_detector` or a `imcflibs.imagej.trackmate.log_detector`. * `imcflibs.imagej.trackmate.spot_filtering` to create settings to filter detected spots based on optional thresholds for quality, area, circularity & intensity. @@ -159,6 +159,13 @@ detailed information, please refer to the updated API documentation. * `imcflibs.imagej.projections.project_stack` to project along a defined axis using the given projection type. +### Changed + +* `imcflibs.pathtools.listdir_matching` now has an additional optional boolean + parameter `regex` to request the parameter `suffix` being interpreted as a + regular expression for filtering. +* `imcflibs.imagej.misc.calculate_mean_and_stdv` to allow for rounding the results. + ## 1.4.0 ### Added