[Feature]: Biases for Orientational Entropy

[skfegan]

Feature Request

Problem / Motivation

We have implemented a simple orientational entropy calculation. We would like to add the biases to account for interactions between molecules more accurately. This includes the impact of hydrogen bonds on the relative orientations of molecules, and more general alignments.

Proposed Solution

Calculate bias based on probabilities of interactions between molecules.

Expected Impact

A function to calculate the bias factors will be added to the Neighbors class, and the result will be passed to the orientational entropy calculation where it will be included in the equation for orientational entropy.