diff --git a/rbb_tools/src/rbb_tools/commands/index.py b/rbb_tools/src/rbb_tools/commands/index.py
index ccdbb2e..641332b 100644
--- a/rbb_tools/src/rbb_tools/commands/index.py
+++ b/rbb_tools/src/rbb_tools/commands/index.py
@@ -38,6 +38,7 @@ def register_bag_file(api, store_name, file):
     bag.topics=[]
     bag.products=[]
     bag.extraction_failure = False
+    bag.in_trash = False
 
     api.put_bag_meta(store_name, bag.name, bag)
 
@@ -64,7 +65,8 @@ def command(store_name, api):
         return
 
     try:
-        bags = api.list_bags(store_name)
+        bags = api.list_bags(store_name, in_trash=False)
+        trashed_bags = api.list_bags(store_name, in_trash=True)
     except Exception as e:
         print("Reason: " + str(e))
         return
@@ -74,11 +76,19 @@ def command(store_name, api):
         info = store.list_file(bag.store_data)
         bags_by_name[info.get_path()] = bag
 
+    trashed_bags_by_name = {}
+    for bag in trashed_bags:
+        info = store.list_file(bag.store_data)
+        trashed_bags_by_name[info.get_path()] = bag
+
     store_files = store.list_files()
     for file in store_files:
         if file.get_name()[-3:] != "bag":
             continue
 
+        if file.get_path() in trashed_bags_by_name:
+            continue
+
         if not file.get_path() in bags_by_name:
             print("NEW: %s at %s" % (file.get_save_name(), file.get_path()))
             register_bag_file(api, store_info.name, file)